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Reproducibility of CRISPR-Cas9 Methods for generation of conditional mouse alleles: a multi-center evaluation

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Reproducibility of CRISPR-Cas9 Methods for generation of conditional mouse alleles: a multi-center evaluation

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Aaydun1
Last edited Jul 17, 2019
Created on Jul 17, 2019

This visualization uses a random forest classifier to analyze CRISPR-Cas9 experimental data from an Excel file, predicting whether guide and donor sequences yield correctly targeted mouse alleles. The code computes nucleotide and dinucleotide frequencies from sequence regions, then trains a 2000-tree RandomForestClassifier with balanced class weights using scikit-learn. It displays out-of-bag error rates, the top ten features ranked by importance, and confusion matrices from StratifiedKFold cross-validation, revealing which sequence features most strongly influence targeting success across multiple laboratory centers.

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